What is the process and purpose of Tobit analysis in Mplus data analysis?

What is the process and purpose of Tobit analysis in Mplus data analysis?

Tobit analysis is a statistical method used in Mplus data analysis to handle censored data, where some values in the dataset are not fully observed. The purpose of Tobit analysis is to estimate the relationship between a dependent variable and a set of independent variables, while taking into account the censoring mechanism. This method allows for the inclusion of censored data points in the analysis, providing a more accurate and comprehensive understanding of the relationship between variables. The process of Tobit analysis involves adjusting the likelihood function to account for the censoring and using maximum likelihood estimation to obtain parameter estimates. This method is particularly useful in social science research, where censored data is common, and can provide valuable insights into the relationships between variables.

Tobit Analysis | Mplus Data Analysis Examples

Note: This example was done using Mplus version 6.12. The syntax may not work, or may function differently, with other versions of Mplus.

The tobit model, also called a censored regression model, is designed to estimate
linear relationships between variables when there is either left- or right-censoring
in the dependent variable (also known as censoring from below and above,
respectively). Censoring from above takes place when cases with a value at or
above some threshold, all take on the value of that threshold, so
that the true value might be equal to the threshold, but it might also be higher.
In the case of censoring from below, values those that fall at or below some
threshold are censored.

Please note: The purpose of this page is to show how to use various data analysis commands.
It does not cover all aspects of the research process which researchers are expected to do. In
particular, it does not cover data cleaning and checking, verification of assumptions, model
diagnostics and potential follow-up analyses.

Examples of tobit analysis

Example 1.

In the 1980s there was a federal law restricting speedometer readings to no more than 85 mph. So if
you wanted to try and predict a vehicle’s top-speed from a combination of horse-power and engine size,
you would get a reading no higher than 85, regardless of how fast the vehicle was really traveling.
This is a classic case of right-censoring (censoring from above) of the data. The only thing we are certain of is that
those vehicles were traveling at least 85 mph.

Example 2. A research project
is studying the level of lead in home drinking water as a function of the age of
a house and family income. The water testing kit cannot detect lead
concentrations below 5 parts per billion (ppb). The EPA considers levels above
15 ppb to be dangerous. These data are an example of left-censoring (censoring
from below).

Example 3. Consider the situation in which we have a measure of academic
aptitude (scaled 200-800) which we want to model using reading and math test
scores, as well as, the type
of program the student is enrolled in (academic, general, or vocational). The problem here is that students who answer all questions on
the academic aptitude test correctly receive a score of 800, even though it is likely that these
students are not “truly” equal in aptitude. The same is true of students who
answer all of the questions incorrectly. All such students would have a score of
200, although they may not all be of equal aptitude.

Description of the data

Let’s pursue Example 3 from above.

We have a hypothetical data file, tobit.dta with 200 observations.
The academic aptitude variable is apt, the reading and math test scores are read
and math respectively. The variable prog is the type of program
the student is in, it is a categorical (nominal) variable that takes on three
values, academic (prog = 1), general (prog = 2), and vocational (prog
= 3). In addition to the three-category variable prog, the dataset
contains a dummy variable for each level of prog (prog1, prog2,
and prog3), for example, prog1 is equal to 1 when prog=1
(general), and 0 otherwise. The dataset does not contain any missing values. (Note that the names of
variables should NOT be included at the top of the data file.  Instead, the
variables are named as part of the variable command.) You may want to run
the descriptive statistics in a general use statistics package, such as SAS,
Stata or SPSS, because the options for obtaining descriptive statistics are
limited in Mplus. Even if you chose to run descriptive statistics in another
package, it is
a good idea to run a model with type=basic before you do anything else,
just to make sure the dataset is being read correctly.

Lets start by looking at some descriptive statistics generated in another
package. The first table gives the descriptive statistics for the three
continuous variables, and the second table tabulates the categorical
variable prog. As expected the highest value of apt is 800. In this dataset, the lowest value of apt is 352
indicating that no students received a score of 200 (i.e., the lowest
score possible), thus even though censoring from below was possible, it
does not occur in this dataset.

    Variable |       Obs        Mean    Std. Dev.       Min        Max
-------------+--------------------------------------------------------
         apt |       200     640.035    99.21903        352        800
        read |       200       52.23    10.25294         28         76
        math |       200      52.645    9.368448         33         75



    type of |
    program |      Freq.     Percent        Cum.
------------+-----------------------------------
   academic |         45       22.50       22.50
    general |        105       52.50       75.00
 vocational |         50       25.00      100.00
------------+-----------------------------------
      Total |        200      100.00

As we mentioned above, even if you’ve already run descriptive statistics in
another package, you probably want to run an Mplus model with type=basic
to make sure your data has been read in properly. The input file for such a
model is shown below. We have also used the type = plot1
option of the plot command, so that we can use Mplus to generate
histograms and scatterplots.

Data:
  file is https://stats.idre.ucla.edu/wp-content/uploads/2016/02/tobit.dat;
Variable:
  names are id read math prog apt prog1 prog2 prog3;
  usevariables are read math apt prog1 prog2 prog3;
Analysis:
  type = basic;
Plot: 
  type = plot1;

As we mentioned above, you will want to look at this output carefully to be sure that
the dataset was read into Mplus correctly. For example, checking to make sure that
you have the correct number of observations, and that the variables all have
means that are close to those from the descriptive statistics generated in a
general purpose statistical package. If there are missing values for some or all
of the variables, the descriptive statistics generated by Mplus may not match
those from a general purpose statistical package exactly, because by default, Mplus versions
5.0 and later use maximum likelihood based procedures for handling missing
values. Looking at the output shown below we can confirm that the number of
observations is correct and that the means of the variables are consistent with
those from a general purpose statistical package. Later on we will use the variance of
apt as a point of comparison, so we
will make note of this variance (9795.194) shown on the diagonal of the covariance
matrix below.

SUMMARY OF ANALYSIS

Number of groups                                                 1
Number of observations                                         200

<output omitted>

     ESTIMATED SAMPLE STATISTICS


           Means
              READ          MATH          APT           PROG1         PROG2
              ________      ________      ________      ________      ________
      1        52.230        52.645       640.035         0.225         0.525


           Means
              PROG3
              ________
      1         0.250
      

           Covariances
              READ          MATH          APT           PROG2         PROG3
              ________      ________      ________      ________      ________
 READ         105.123
 MATH          63.615        87.768
 APT          656.273       681.595      9844.416
 PROG2          2.075         2.157        19.906         0.251
 PROG3         -1.515        -1.564       -19.677        -0.132         0.188


           Correlations
              READ          MATH          APT           PROG2         PROG3
              ________      ________      ________      ________      ________
 READ           1.000
 MATH           0.662         1.000
 APT            0.645         0.733         1.000
 PROG2          0.404         0.460         0.401         1.000
 PROG3         -0.340        -0.385        -0.457        -0.607         1.000

The plot command included in the input file above allows us to view histograms of our variables. We can view
the histogram by clicking on the “Graph” menu, and then moving down to
click on “View graphs.” In the window that appears select
“Histograms” and click “view.” A
second window will appear, where we can select the variable we wish to plot. Below is a
histogram of apt.

Image tobit_1

Looking at the above histogram showing the distribution of apt, we can
see the censoring in the data, that is, there are more cases with scores of
750 to 800 (i.e., the bin labeled 777.5) than
one would expect looking at the rest of the distribution. Below is an alternative histogram
that further highlights the excess of cases where apt=800. To produce
this graph we proceeded as before, but after we selected apt as the
variable to be plotted, we moved to the “Display properties” tab (in the same
window), here we set the number of bins to be the range of apt plus one
(800-352+1=449), this produces a histogram with a bin for each integer value
from 352 to 800. Because
apt is continuous, most values of apt are unique in the dataset,
although close to the center of the distribution there are a few values of
apt
that have two or three cases. The spike on the far right of the
histogram is the bar for cases where apt=800, the height of this bar
relative to all the others clearly shows the excess number of cases with this value.

Image tobit_2

Next we’ll explore the bivariate relationships in our dataset. We can view
the histogram by going to the “Graph” menu, and down to “View graphs,” then
selecting “Scatterplots” in the window that appears. Clicking view will show a
second window, where we can select the variables we wish to plot. Below is a scatterplot showing read and apt. Note the collection of cases
near the top of the scatterplot,
due to the censoring in the distribution of apt.

Image tobit_3

Analysis methods you might consider

Below is a list of some analysis methods you may have encountered.
Some of the methods listed are quite reasonable while others have either
fallen out of favor or have limitations.

Tobit analysis

Below is the content of an Mplus input file for a tobit regression model.
Because we are not using all of the variables in the dataset in the model, we
use the usevariables
option of the variables command to indicate which variables should be
included in the model. The censored option
declares that the variable apt is censored. The (a)
following apt on
the censored option indicates that the variable is censored from above (i.e., right censoring).  If we had
censoring from below (i.e., left-censoring), we would have used the (b) option instead. 
By default in version 6.12, Mplus uses a robust weighted least squares
estimator. You can use maximum likelihood estimation with robust standard errors
by specifying estimator = mlr in the analysis command.  If you
would like maximum likelihood estimation without robust standard errors, use
estimator = ml
in the analysis command. 

data:
  file is https://stats.idre.ucla.edu/wp-content/uploads/2016/02/tobit.dat ;
variable:
  names are id read math prog apt prog1 prog2 prog3;
  usevariables are read math apt prog2 prog3;
  censored are apt (a);
model:
  apt on read math prog2 prog3;
output:
   stdyx;
SUMMARY OF ANALYSIS

Number of groups                                                 1
Number of observations                                         200

Number of dependent variables                                    1
Number of independent variables                                  4
Number of continuous latent variables                            0

Observed dependent variables

  Censored
   APT

Observed independent variables
   READ        MATH        PROG2       PROG3


Estimator                                                    WLSMV
Maximum number of iterations                                  1000
Convergence criterion                                    0.500D-04
Maximum number of steepest descent iterations                   20
Parameterization                                             DELTA
SUMMARY OF CENSORED LIMITS

      APT              800.000



THE MODEL ESTIMATION TERMINATED NORMALLY
MODEL FIT INFORMATION

Number of Free Parameters 6

Chi-Square Test of Model Fit

Value 0.000*
Degrees of Freedom 0
P-Value 0.0000

* The chi-square value for MLM, MLMV, MLR, ULSMV, WLSM and WLSMV cannot be used
for chi-square difference testing in the regular way. MLM, MLR and WLSM
chi-square difference testing is described on the Mplus website. MLMV, WLSMV,
and ULSMV difference testing is done using the DIFFTEST option.

RMSEA (Root Mean Square Error Of Approximation)

Estimate 0.000
90 Percent C.I. 0.000 0.000
Probability RMSEA <= .05 0.000

CFI/TLI

CFI 1.000
TLI 1.000

Chi-Square Test of Model Fit for the Baseline Model

Value 930585.250
Degrees of Freedom 5
P-Value 0.0000

WRMR (Weighted Root Mean Square Residual)

Value 0.000
MODEL RESULTS

                                                    Two-Tailed
                    Estimate       S.E.  Est./S.E.    P-Value

 APT      ON
    READ               2.698      0.637      4.234      0.000
    MATH               5.914      0.774      7.640      0.000
    PROG2            -12.715     13.525     -0.940      0.347
    PROG3            -46.144     14.233     -3.242      0.001

 Intercepts
    APT              209.568     33.189      6.314      0.000

 Residual Variances
    APT             4313.421    504.344      8.553      0.000

Because we used the stdyx option of the output command, the output
includes standardized coefficients. We did this primarily to obtain the
R-square values for the output variables, so we have omitted the standardized
output to save space. Based on this output, the model explains about 62% of the
variance in apt.

<output omitted>

R-SQUARE

    Observed                   Residual
    Variable        Estimate   Variance

    APT                0.616

We may also want to test that the coefficients for prog2, and prog3,
all equal to zero. This type of test can also be
described as an overall test for the effect of prog. There are
multiple ways to test this type of hypothesis, the model test command
requests one of them, a Wald test. The Mplus input file shown
below is similar to the first regression model, except that the coefficients for
prog2
, and prog3
are assigned the names p2, and p3, respectively. Note that
each variables to be tested must be alone on a line followed by its label in
parentheses. In the
model test command,
these coefficient names (i.e., p2, and p3) are used to test that each of the coefficients is equal to 0.

Data:
  File is https://stats.idre.ucla.edu/wp-content/uploads/2016/02/tobit.dat;
Variable:
  Names are id read math prog apt prog1 prog2 prog3;
  usevariables are read math apt prog2 prog3;
  censored are apt (a);
Model:
  apt on read math
    prog2 (p1)
    prog3 (p2);
Model test:
  p1 = 0;
  p2 = 0;

The majority of the output from this model is the same as the first model, so we will
only show part of the output generated by the model test command.

Wald Test of Parameter Constraints

          Value                             11.906
          Degrees of Freedom                     2
          P-Value                           0.0026

The test statistic of 11.906, with 2 degrees of freedom and an associated p-value of
0.0026 indicates that the overall effect of prog is statistically significant.

We can also test additional hypotheses about the differences in the coefficients for
different levels of prog. Below we test that the coefficient for prog2 is equal to the
coefficient for prog3. In the output below we see that the two coefficient
are significantly different.

Data:
  File is https://stats.idre.ucla.edu/wp-content/uploads/2016/02/tobit.dat;
Variable:
  Names are id read math prog apt prog1 prog2 prog3;
    Missing are all (-9999) ;
    usevariables are read math apt prog2 prog3;
    censored are apt (a);
Model:
  apt on read math
    prog2 (p1)
    prog3 (p2);
Model test:
  p1 = p2;
  

Wald Test of Parameter Constraints

          Value                              6.979
          Degrees of Freedom                     1
          P-Value                           0.0082

The test statistic of 6.979, with 1 degree of freedom and an associated p-value of 0.0082
indicates that the coefficient for prog=2 is significantly different from
the coefficient for prog=3.

See also

References

Long, J. S. 1997. Regression Models for Categorical and Limited Dependent Variables.
Thousand Oaks, CA: Sage Publications.

McDonald, J. F. and Moffitt, R. A. 1980. The Uses of Tobit Analysis. The Review of Economics and Statistics
Vol 62(2): 318-321.

Tobin, J. 1958. Estimation of relationships for limited dependent variables.
Econometrica 26: 24-36.

 

Cite this article

stats writer (2024). What is the process and purpose of Tobit analysis in Mplus data analysis?. PSYCHOLOGICAL SCALES. Retrieved from https://scales.arabpsychology.com/stats/what-is-the-process-and-purpose-of-tobit-analysis-in-mplus-data-analysis/

stats writer. "What is the process and purpose of Tobit analysis in Mplus data analysis?." PSYCHOLOGICAL SCALES, 29 Jun. 2024, https://scales.arabpsychology.com/stats/what-is-the-process-and-purpose-of-tobit-analysis-in-mplus-data-analysis/.

stats writer. "What is the process and purpose of Tobit analysis in Mplus data analysis?." PSYCHOLOGICAL SCALES, 2024. https://scales.arabpsychology.com/stats/what-is-the-process-and-purpose-of-tobit-analysis-in-mplus-data-analysis/.

stats writer (2024) 'What is the process and purpose of Tobit analysis in Mplus data analysis?', PSYCHOLOGICAL SCALES. Available at: https://scales.arabpsychology.com/stats/what-is-the-process-and-purpose-of-tobit-analysis-in-mplus-data-analysis/.

[1] stats writer, "What is the process and purpose of Tobit analysis in Mplus data analysis?," PSYCHOLOGICAL SCALES, vol. X, no. Y, ص Z-Z, June, 2024.

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